A Quick and Easy Solution to Problems with dplyr Left Join

A frequent problem with any join, but in particular dplyr left_join, is key columns on the “left” dataset mapping to multiple rows in the “right” dataset, creating new rows in the left dataset. When there’s only a few unique combinations of the key values, this is fairly easy to resolve by hand - identify the misspelled or otherwise wrong key on either side and fix it. When you have a lot of unique key combinations, this is a pain. This post will show you my quick and easy way to identify the problematic keys so they can be corrected.

(I debated about whether to write this because it’s so simple, but most Stack Overflow answers I found on the subject were ways to work around the problem, such as dropping any duplicate matches, and not fix it.)

It only takes 4 steps:

  1. Create a unique ID column in the left dataset (i.e. the one you’re merging data into): data$unique_id <- 1:nrow(data)
  2. Run left_join
  3. Identify observations that generated multiple matches: dups <- duplicated(data$unique_id)
  4. Get the key(s) that created the problem: unique(data[dups, c(key_1, key_2)])

And there you go - you’ve now found the key values or combinations of key values that aren’t generating unique matches and can easily correct them (hopefully).

Sean Norton
Postdoctoral Research Associate